The protein recognition index pri measures the similarity between hbonding features in a given complex predicted or designed and the characteristic hbond trends from crystallographic complexes based on hydrogenbond interactions identified by hbind software accompanying the paper for rigorously defining intermolecular hbonds by donor. This increase of data scale, complexity and the need of interoperability means that there are many fundamental challenges in the database development, deployment and distribution. Citescore values are based on citation counts in a given year e. Biostatistics and bioinformatics penn state cancer institute. Yumin zhu, gang xu, zhuoer dong, yinghui chen, meifeng zhou, xupeng chen, xiaocheng xi, xi hu, jingyi cao, xiaofan liu. James ma weiming is a software engineer based in singapore. The goals of gpb are to disseminate new frontiers in the field of omics and bioinformatics, to publish highquality discoveries.
In the pursuit of ultimate systematics, i decided to learn molecular biology. One of the main reasons for the controversy is the techniques for bone tunne. View yang xuehuans profile on linkedin, the worlds largest professional community. Once i was a baby, then gradually got to know something. Taking advantage of these resources to enhance traditional wet lab research requires a unique skillset that incorporates computer science, biology, and statistics. Shanfeng zhu, qizhi fang, weiming zheng, social choice for data fusion. Johns hopkins university, baltimore, md, united states email heng zhu proteomics. The spliced alignment program geneseqer written in c language. Approximate and dynamic rank aggregation, theoretic computer science 3253.
Bioinformatics laboratory, faculty of computer and information science. However, the main impulse for the emergence of bioinformatics came from the completion of the human genome project at beginning of the new. Cs3369 realtime computer control software semester a, 20002001. Investigators collaborate in the full spectrum of cancer research, from basic science to translational. View wei zhus profile on linkedin, the worlds largest professional community. The peakview software with a swath plugin ab sciex was used for. Department of molecular, cell and cancer biology employs a team of bioinformaticians, led by dr. Shanfeng zhu, qizhi fang, weiming zheng, social choice for data fusion international journal of information technology and decision making 34 619631 2004 francis y. Jian yang, junqi cheng, yangyun zou, zhen xia and jun zhu. Genomics, proteomics and bioinformatics gpb is the official journal of beijing institute of genomics, chinese academy of sciences and genetics society of china. Chinese academy of sciences, beijing, china email zhong jin software, high. Our research investigates molecular and epigenetic mechanisms that regulate differential gene expression during cell fate specification. Structure can identify subsets of the whole sample by detecting allele frequency differences within the data and can assign individuals to those subpopulations based on analysis of.
They will give you freedom of exploring various real data. Bioinformatics, computational biology and genomics researchgate, the professional network for. Prototype learning using metric learning based behavior recognition. Weiming zhu software engineer applied underwriters.
No warranty of any sort is provided for use of the software. Weiming zhu software engineer applied underwriters linkedin. View weiming zhus profile on linkedin, the worlds largest professional community. Pengfei zhu s 7 research works with 29 citations and 180 reads, including. Petersburg genome assembler is a genome assembly algorithm which was designed for single cell and multicells bacterial data sets. Bioinformatics university of massachusetts medical school. Weiming zhu is an assistant professor in the production, technology and operations management department of iese business school. Bmc bioinformatics is part of the bmc series which publishes subjectspecific journals focused on the needs of individual research communities across all. In 2012, the company began sending some students to study at partner high schools in the united states. Weiming zhus research works shenzhen second peoples. Institute of bioinformatics, zhejiang university, hangzhou, china this software can be freely redistributed with noncommercial purpose and under the condition of no changes to the software and its related documents. Placement of double tunnels in acl reconstruction using. Hierarchical clustering of maximum parsimony reconciliations.
Tpmcalculator is a onestep software package to quantify mrna abundance for several genomic features including genes, transcripts, exons and introns. After a while i got a chance to learn things in paleontolgoy. Skilled in bioinformatics, next generation sequencing, data mining, machine learning, life. Weiming zhu research professor at university of electronic science and technology of china. This article has been cited by the following articles in journals that are participating in crossref citedby linking. This work was supported by grants from the us national cancer institute r01 ca2897 to y. Get detailed information about weiming zhu, including previous known addresses, phone numbers, jobs, schools, or run a comprehensive background check anonymously. Zhu, shanfeng kyoto university bioinformatics center. Sciome llc is an innovative research and technology consulting company providing state of the art informatics solutions for the life sciences industry. The biostatistics and bioinformatics shared resource provides highquality and timely biostatistics and bioinformatics support to penn state cancer institute members. The software simultaneously searches a protein sequence database and a glycan structure database to find the best pair of peptide and glycan for each input. Bioinformatics msc queen mary university of london.
Director oncology translational sciences at astrazeneca. He is also an inventor and coinventor for 21 granted us patents. Tutorial 3 january 2020 at the 2020 phylogenomics software symposium held in conjunction with the ssb standalone meeting in gainesville, florida. Join over 5 million developers in solving code challenges on hackerrank, one of the best ways to prepare for programming interviews. Beijing, china email weimin zhu bioinformatics, databases, and big data. Weirong zhu has authored and coauthored 20 academic papers in international journals, conferences, and workshops. Therefore, it might not be suitable for large genomes projects. Comparison of statistical packages jump to navigation jump to search. Ingolf bach, phd university of massachusetts medical school. Weirong zhu staff software engineer tech lead manager.
Antibacterial activity of gallic acid from the flowers of. It includes content provided to the pmc international archive by participating publishers. To address this need, we developed a novel software tool, glycomaster db, to assist the automated and highthroughput identification of intact nlinked glycopeptides from msms spectra. Examples of bioinformatics training programs in china. L wang, m zhang, m yang, w zhu, j wu, x gong, w wen. As biological sciences have become more data driven, bioinformatics is now central to modern biological research, from genetics, nutrition and epidemiology to ecology, neuroscience and biomedicine.
James started his career in financial services working with treasury fixed income and foreign exchange products, and fund distribution. Xizang zi zhu you mandarin chinese edition weiming zhu on. Facebook gives people the power to share and makes the world more open and connected. This programme will teach you how to manage and manipulate large datasets to reveal new insights in biological sciences. Maximum parsimony reconciliation in the duplicationtransferloss model is a widelyused method for analyzing the evolutionary histories of pairs of entities such as hosts and parasites, symbiont species, and.
Talk about phylonet june 4, 2018, by luay nakhleh at the ssb standalone meeting in ohio general overview. The last 10 years has seen rapid advances in sequencing technology, along with the explosion of publicly available largescale datasets. Everyday bioinformatics is done with sequence search programs like blast, sequence analysis programs, like the emboss and staden packages, structure prediction programs like threader or phd or molecular imagingmodelling programs like rasmol and what if. Pengfei zhus research works chinese academy of sciences. Professor binhai zhu computational geometry is a branch of computer science devoted to the study of algorithms which can be stated in terms of geometry. Bioinformatics tutorial basic bioinformatics tutorial. View weiming zhu s profile on angellist, the startup and tech network software engineer cincinnati welltrained electrical engineering phd with wide range of knowledge, years of experience in. Find weiming zhous phone number, address, and email on spokeo, the leading online directory for contact information. She joined the university of massachusetts medical school umms as the head of bioinformatics core of program in gene function and expression pgfe in 2007. His studies and research are focused on financial technology, machine learning, data sciences, and computational finance. We specialize in developing and deploying novel bioinformatics, cheminformatics, textmining and data science solutions for researchers in government, academic and private sector organizations. Since then, bioinformatics has gradually carved out a place for itself in the scientific community with, for example, the creation in 1985 of cabios computer applications in the biosciences, which is now known as bioinformatics oxford, england.
Dongxiao zhu is currently an associate professor at department of computer science, wayne state university. Biomolecular databases are becoming increasingly large, complex and interconnected. Join facebook to connect with weiming zhu and others you may know. Europe pmc is a service of the europe pmc funders group, in partnership with the european bioinformatics institute. Reproducibility with highdimensional data presented by debashis ghosh, phd university of colorado sponsored by the university of michigan department of. Proceedings of 2011 joint conference on 7th taiwan software engineering. Examples of biological databases developed and maintained in. They will have contributed code to large software projects, preferably demonstrating strong competency in both statically and dynamically typed languages. Plan for a chinese academy stirs worries in a conn. Zhu is currently a professor and the head of bioinformatics core in the department of molecular, cell and cancer biology mccb of umms. Julie zhu, whose purpose is to provide bioinformatics support. The database research and development group is headed by weimin zhu. Some purely geometrical problems arise out of the study of computational geometric algorithms, and such problems are also considered to be part of computational geometry. The journal is intended for marine scientists, biological oceanographers, conservation biologists, marine technologists, policy makers and legislators.
Weiming zhu s 4 research works with 44 citations and 172 reads, including. Guo, weilong phd, bioinformatics associate professor department of crop genomics and bioinformatics china agricultural university no 2 west yuanmingyuan road haidian. See the complete profile on linkedin and discover weiming s. Bioinformatics, volume 34, issue 16, 15 august 2018, pages. The program processes rnaseq alignments in bam file format producing text files with tpm values, raw read counts and feature lengths for each genomic feature. Trends in applied econometrics software development 19852008. View weiming zhu s profile on linkedin, the worlds largest professional community. Spades works with ion torrent, pacbio, oxford nanopore, and illumina pairedend, matepairs and single reads. Bioinformatics scientist inova translational medicine. The chinese company, weiming education group, educates 40,000 students on 42 campuses in china, according to a letter it sent west hartford. The outcomes of doublebundle anterior cruciate ligament reconstruction dbaclr are becoming controversial. Sciome enabling science via analytical informatics. Spades has been integrated into galaxy pipelines by guy lionel and philip mabon. We use mouse embryogenesis as model system applying molecular, biochemical and genetic methods.
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